IMGT Repertoire (IG and TR)

Gene table: dog (Canis lupus familiaris) TRBJ

Here you are: IMGT Web resources > IMGT Repertoire (IG and TR) > 1. Locus and genes

Fct: FUNCTIONALITY
- F: Functional
- P: Pseudogene
- ORF: Open Reading Frame
- R: Rearranged
T: Transcribed
Pr: Translated into protein

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

Click on:

IMGT gene name to get the corresponding IMGT/GENE-DB entry,
IMGT allele name to see the corresponding Alignments of alleles,
accession number to get the corresponding IMGT/LIGM-DB entry.

IMGT gene name	IMGT allele name	Fct	R	T	Pr	Positions in the locus	IMGT/LIGM-DB reference sequences					IMGT/LIGM-DB sequences from the literature
IMGT gene name	IMGT allele name	Fct	R	T	Pr	Positions in the locus	Breed	Clone names	Accession numbers	Positions in the sequence (J-REGION)	Secondary accession numbers	Breed			Clone names	Accession numbers	Positions in the sequence (J-REGION)
	TRBJ1-1	TRBJ1-1*01	F						Boxer			AAEX02035465	[1]		49933-49980
	TRBJ1-2	TRBJ1-2*01	F						Boxer			AAEX02035465	[1]		49802-49845
	TRBJ1-3	TRBJ1-3*01	P						Boxer			AAEX02035465	[1]	(1)	49194-49243
	TRBJ1-4	TRBJ1-4*01	F						Boxer			AAEX02035465	[1]		48612-48661
	TRBJ1-5	TRBJ1-5*01	F						Boxer			AAEX02035465	[1]		48358-48407
	TRBJ1-6	TRBJ1-6*01	F						Boxer			AAEX02035465	[1]		47894-47946

IMGT notes:

(1) Pseudogene because of STOP CODON in J-REGION

IMGT references:

[1] Lindblad-Toh K. et al., Nature, 438, 803-819 (2005). PMID: 16341006

See also (IMGT Scientific chart):

Created: 30/11/2009
Last updated: 29/06/2011
Authors: Amandine Lacan
Editor: Chantal Ginestoux
Contact: Marie-Paule Lefranc

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