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"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

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Due to the poor quality of the assembly only clearly identified genes are annotated. Moreover some duplications such as TRDV1-4 in Btau3.1_ChrUn.139 and TRDV1-8 in Btau3.1_ChrUn.41 may result from assembly errors.

IMGT subgroup IMGT gene name IMGT allele name Fct Chromosomal
localization
R T Pr IMGT/LIGM-DB locus reference sequences IMGT/LIGM-DB sequences from the literature
Breed Clone names Accession numbers Positions in the sequence
(L-V-GENE-UNIT)
Secondary accession numbers Breed Clone names Accession numbers Positions in the sequence
(L-V-GENE-UNIT)
TRDV1 TRDV1-1 TRDV1-1*01 F 10 Hereford IMGT000049 MAP 336584..337189 Hereford TRDV1S8*01 Btau3.1_Chr10.28 [1] (9) complement(245668..246273)
TRDV1-1*02 F Hereford TRDV1S30*01 Btau3.1_ChrUn.129 [1] (9,10) 300288..300894
TRDV1-2 TRDV1-2*01 F 10 Hereford IMGT000049 MAP 381222..381830 Hereford TRDV1S7-1*01 Btau3.1_Chr10.28 [1] (9) complement(198246..198854)
TRDV1S7-2*01 Btau3.1_ChrUn.5529 [1] (9) complement(9562..10170)
TRDV1-3 TRDV1-3*01 F 10 Hereford IMGT000049 MAP 422753..423347 Hereford TRDV1S6-1*01 Btau3.1_Chr10.28 [1] (9) 132846..133440
TRDV1S6-2*01 Btau3.1_ChrUn.857 [1] (9) 50213..50807
TRDV1-4 TRDV1-4*01 F 10 Hereford IMGT000049 MAP 466128..466732 Hereford TRDV1S18-1*01 Btau3.1_ChrUn.139 [1] (9) 16460..17064
TRDV1S18-2*01 Btau3.1_ChrUn.139 [1] (9) complement(74997..75601)
TRDV1-5 TRDV1-5*01 F 10 Hereford IMGT000049 MAP 647182..647779 Hereford TRDV1S20*01 Btau3.1_ChrUn.139 [1] (9) 314906..315504
TRDV1-6 TRDV1-6*01 P (1) 10 Hereford IMGT000049 MAP 669770..670375 Hereford Btau3.1_ChrUn.139 [1] (9) 341005..341610
TRDV1-7 TRDV1-7*01 F 10 Hereford IMGT000049 MAP 685347..685955 Hereford TRDV1S21-1*01 Btau3.1_ChrUn.139 [1] (9) 356577..357185
TRDV1S21-2*01 Btau3.1_ChrUn.4913 [1] (9) complement(10636..11244)
TRDV1-8 TRDV1-8*01 F 10 Hereford IMGT000049 MAP 724738..725238 Hereford TRDV1S13-1*01 Btau3.1_ChrUn.41 [1] (9) 282485..282985
TRDV1-8*02 F 10 Hereford TRDV1S3*01 Btau3.1_Chr10.28 [1] (9,10) 84670..85170
TRDV1-9 TRDV1-9*01 F 10 + + Hereford IMGT000049 MAP 737253..737855 Hereford TRDV1S17*01 Btau3.1_ChrUn.41 [1] (9) 642343..642945
TRDV1-10 TRDV1-10*01 F 10 + + Hereford IMGT000049 MAP 756768..757370 Hereford TRDV1S15-2*01 Btau3.1_ChrUn.41 [1] (9) 661894..662496
TRDV1-10D TRDV1-10D*01 F 10 + + Hereford IMGT000049 MAP complement(2866264..2866866) Hereford TRDV1S15-1*01 Btau3.1_ChrUn.41 [1] (9) 313360..313962
TRDV1-11 TRDV1-11*01 F 10 + + Hereford IMGT000049 MAP 1817505..1818107 Hereford TRDV1S19*01 Btau3.1_ChrUn.139 [1] (9) 303549..304151
TRDV1-11*02 F + + Hereford TRDV1S32*01 Btau3.1_ChrUn.129 [1] (9,10) 414487..415095
TRDV1-12 TRDV1-12*01 F 10 Hereford IMGT000049 MAP 1857773..1858273 Hereford TRDV1S39*01 Btau3.1_ChrUn.298 [1] (9) 263421..263921
TRDV1-13 TRDV1-13*01 F (2) 10 Hereford IMGT000049 MAP 1886230..1886824
TRDV1-13*02 F (2) + + Hereford TRDV1S44*01 Btau3.1_ChrUn.1227 [1] (9,10) complement(79886..80480)
TRDV1-14 TRDV1-14*01 F 10 Hereford IMGT000049 MAP 1902814..1903424 Hereford TRDV1S43*01 Btau3.1_ChrUn.1227 [1] (9) complement(62953..63563)
TRDV1-15 TRDV1-15*01 F 10 Hereford IMGT000049 MAP 1926154..1926760
TRDV1-15*02 F Hereford TRDV1S42*01 Btau3.1_ChrUn.1227 [1] (9,10) complement(39656..40263)
TRDV1-15*03 F Hereford TRDV1S48*01 Btau3.1_ChrUn.2188 [1] (9,10) 33687..34294
TRDV1-16 TRDV1-16*01 F 10 Hereford IMGT000049 MAP 2172532..2173139 Hereford TRDV1S35*01 Btau3.1_ChrUn.158 [1] (9) complement(237072..237679)
TRDV1-17 TRDV1-17*01 ORF (3) 10 Hereford IMGT000049 MAP 2199793..2200408 Hereford TRDV1S25-2*01 Btau3.1_ChrUn.129 [1] (9) 390952..391567
TRDV1S25-1*01 Btau3.1_ChrUn.221 [1] (9) complement(174821..175436)
TRDV1-17*02 ORF (4) + + Hereford TRDV1S34*01 Btau3.1_ChrUn.158 [1] (9,10) complement(209501..210077)
TRDV1-18 TRDV1-18*01 F 10 + + Hereford IMGT000049 MAP 2231429..2232025 Hereford TRDV1S33*01 Btau3.1_ChrUn.158 [1] (9) complement(178884..179480)
TRDV1-19 TRDV1-19*01 F 10 Hereford IMGT000049 MAP 2251584..2252184
TRDV1-20 TRDV1-20*01 P (4) 10 Hereford IMGT000049 MAP 2280113..>2280262 (11) Hereford Btau3.1_ChrUn.158 [1] (9) complement(<155920..156069) (11)
TRDV1-21 TRDV1-21*01 F 10 Hereford IMGT000049 MAP complement(2325118..2325689)
TRDV1-22 TRDV1-22*01 ORF (4) 10 Hereford IMGT000049 MAP complement(2348378..2348976)
TRDV1-23 TRDV1-23*01 P (5) 10 Hereford IMGT000049 MAP complement(2376289..2376889)
TRDV1-24 TRDV1-24*01 F 10 Hereford IMGT000049 MAP complement(2394644..2395246) Hereford TRDV1S14*01 Btau3.1_ChrUn.41 [1] (9) 294987..295589
TRDV1-25 TRDV1-25*01 F 10 Hereford IMGT000049 MAP complement(2407292..2407792) Hereford TRDV1S12*01 Btau3.1_ChrUn.41 [1] (9) 272858..273358
TRDV1-26 TRDV1-26*01 P (6) 10 Hereford IMGT000049 MAP complement(2425319..2425892) Hereford Btau3.1_ChrUn.41 [1] (9) 254764..255330
TRDV1-27 TRDV1-27*01 F 10 + + Hereford IMGT000049 MAP complement(2429767..2430405) Hereford TRDV1S11*01 Btau3.1_ChrUn.41 [1] (9) 250250..250888
TRDV1-27*02 F Hereford TRDV1S52-1*01 Btau3.1_ChrUn.3620 [1] (9,10) 538..1168 Hereford TRDV1S52-2*01 Btau3.1_ChrUn.3793 [1] (9) 3915..4545
TRDV1-28 TRDV1-28*01 P (7) 10 Hereford IMGT000049 MAP complement(2447224..2447837) Hereford TRDV1S9*01 Btau3.1_ChrUn.41 [1] (9) complement(161485..162099)
TRDV1-29 TRDV1-29*01 F 10 Hereford IMGT000049 MAP complement(2473337..2473933) Hereford TRDV1S10*01 Btau3.1_ChrUn.41 [1] (9) complement(188072..188668)
TRDV1-29*02 F Hereford TRDV1S46*01 Btau3.1_ChrUn.1758 [1] (9,10) complement(57989..58581)
TRDV1-29*03 F Hereford TRDV1S23*01 Btau3.1_ChrUn.221 [1] (9,10) complement(6038..6638)
TRDV1-30 TRDV1-30*01 F 10 Hereford IMGT000049 MAP complement(2497562..2498155) Hereford TRDV1S24*01 Btau3.1_ChrUn.221 [1] (9) complement(30244..30837)
TRDV1-31 TRDV1-31*01 F 10 Hereford IMGT000049 MAP complement(2659878..2660487) Hereford TRDV1S26*01 Btau3.1_ChrUn.221 [1] (9) complement(220716..221325)
TRDV1-32 TRDV1-32*01 F 10 Hereford IMGT000049 MAP complement(2679937..2680544) Hereford TRDV1S27-1*01 Btau3.1_ChrUn.221 [1] (9) complement(240695..241302)
TRDV1S27-2*01 Btau3.1_ChrUn.2578 [1] (9) complement(31652..32259)
TRDV1-33 TRDV1-33*01 F 10 Hereford IMGT000049 MAP complement(2703621..2704226) Hereford TRDV1S51-2*01 Btau3.1_ChrUn.2982 [1] (9) 15173..15778
TRDV1S51-1*01 Btau3.1_ChrUn.3458 [1] (9) complement(16933..17538)
TRDV1-33*02 F Hereford TRDV1S50*01 Btau3.1_ChrUn.10149 [1] (9,10) complement(1804..2409)
TRDV1-33*03 F Hereford TRDV1S28*01 Btau3.1_ChrUn.221 [1] (9,10) complement(264398..265003)
TRDV1-33*04 F Hereford TRDV1S36*01 Btau3.1_ChrUn.298 [1] (9,10) 28570..29175
TRDV1-33*05 F + + Hereford TRDV1S16*01 Btau3.1_ChrUn.41 [1] (9,10) 480039..480644
TRDV1S1 TRDV1S1*01 F 10 Hereford Btau3.1_Chr10.28 [1] (9,10) complement(20340..20949)
TRDV1S2 TRDV1S2*01 ORF (4) 10 Hereford TRDV1S2-1-01 Btau3.1_Chr10.28 [1] (9,10) 58187..58762 Hereford TRDV1S2-2*01 Btau3.1_ChrUn.4123 [1] (9) 14961..15536
TRDV1S4 TRDV1S4*01 F 10 Hereford TRDV1S4-1*01 Btau3.1_Chr10.28 [1] (9,10) 97187..97789 Hereford TRDV1S4-3*01 Btau3.1_ChrUn.3566 [1] (9) 19054..19657
TRDV1S4-2*01 Btau3.1_ChrUn.857 [1] (9) 4172..4774
TRDV1S5 TRDV1S5*01 F 10 Hereford TRDV1S5-1*01 Btau3.1_Chr10.28 [1] (9,10) 115470..116065 Hereford TRDV1S5-2*01 Btau3.1_ChrUn.857 [1] (9) 28383..28978
TRDV1S22 TRDV1S22*01 ORF (4) Hereford Btau3.1_ChrUn.139 [1] (9,10) 373301..373876
TRDV1S29 TRDV1S29*01 F Hereford Btau3.1_ChrUn.129 [1] (9,10) 5640..6247
TRDV1S29*02 F Hereford TRDV1S41*01 Btau3.1_ChrUn.857 [1] (9,10) 74024..74631
TRDV1S31 TRDV1S31*01 F Hereford Btau3.1_ChrUn.129 [1] (9,10) 331405..332015
TRDV1S37 TRDV1S37*01 F Hereford Btau3.1_ChrUn.298 [1] (9,10) 206764..207364
TRDV1S38 TRDV1S38*01 F + + Hereford Btau3.1_ChrUn.298 [1] (9,10) 223460..224056
TRDV1S40 TRDV1S40*01 F Hereford Btau3.1_ChrUn.857 [1] (9,10) 19494..20094
TRDV1S45 TRDV1S45*01 F Hereford Btau3.1_ChrUn.1758 [1] (9,10) complement(21904..22497)
TRDV1S47 TRDV1S47*01 F Hereford TRDV1S47-1*01 Btau3.1_ChrUn.2188 [1] (9,10) 10476..11070 Hereford TRDV1S47-2*01 Btau3.1_ChrUn.3970 [1] (9) 9390..9984
TRDV1S49 TRDV1S49*01 F Hereford Btau3.1_ChrUn.3566 [1] (9,10) 5067..5567
TRDV1S53 TRDV1S53*01 (F) + + EF175171 [2] (10) #c 1..224
TRDV1S54 TRDV1S54*01 (F) + + EF175172 [2] (10) #c 61..339
TRDV1S56 TRDV1S56*01 (F) + + D16113 [3] (10) #c 61..348
TRDV2 TRDV2 TRDV2*01 F 10 + + Hereford IMGT000049 MAP 3105697..3106225 Hereford Btau3.1_ChrUn.158 [1] (9) complement(22632..23160)
TRDV3 TRDV3 TRDV3*01 F 10 Hereford IMGT000049 MAP complement(3236267..3236888) Hereford TRDV4*01 Btau3.1_Chr10.30 [1] (9) 396663..397284
TRDV4 TRDV4 TRDV4*01 ORF (8) 10 Hereford IMGT000049 MAP 3078995..3079535 Hereford Btau3.1_ChrUn.158 [1] (9) complement(49100..49640)
TRDV5 TRDV5-1 TRDV5-1*01 F 10 + + Hereford IMGT000049 MAP 3000922..3001486
TRDV5-1*02 F Hereford TRDV3S2*01 Btau3.1_ChrUn.1002 [1] (9,10) 77577..78141
TRDV5-1*03 F Hereford TRDV3S1*01 Btau3.1_ChrUn.7503 [1] (9,10) complement(3103..3667)
TRDV5-2 TRDV5-2*01 F 10 Hereford IMGT000049 MAP 3035223..3035778

MAP: Mapped reference sequences.
#c: rearranged cDNA.

IMGT notes:
  1. (1) STOP-CODON in V-REGION
  2. (2) STOP-CODON at position 108 (last 3' codon of germline CDR3-IMGT) may disappear during rearrangements
  3. (3) insertions and deletions in V-REGION
  4. (4) deletions in V-REGION
  5. (5) frameshift in L-PART1
  6. (6) frameshift in V-REGION
  7. (7) no INIT-CODON
  8. (8) noncanonical V-NONAMER
  9. (9) The localization of the sequences in the Btau3.1 project is indicated in the accession number after the underscore
  10. (10) Sequence not in locus reference sequence (assembly ARS-UCD1.2)
  11. (11) Positions of V-REGION
IMGT references:
  1. [1] Herzig C.T. et al., BMC Genomics, 11, 100 (2010). PMID: 20144200
  2. [2] Van Rhijn I. et al., Mol Immunol., 44, 3155-3161 (2007). PMID: 17418895
  3. [3] Takeuchi N. et al., Immunogenetics, 35, 89-96 (1992). PMID: 1346526
Created:
22/07/2010
Last updated:
31/07/2020
Authors:
Amandine Lacan, Perrine Pégorier