IMGT Web resources: IMGT repertoire FR-IMGT and CDR-IMGT lengths: Rainbow trout (Oncorhynchus mykiss) TRAV

Only FUNCTIONAL and ORF V-GENEs are shown.

The proteolytic cleavage site between the leader peptide and the V-REGION is putative and the assignment of amino acid 1 to one or the other region is uncertain.

The Rainbow trout (Oncorhynchus mykiss) TRAV genes have a temporary designation based on the IMGT gene name nomenclature rules for the unmapped genes, the incomplete loci, or the cDNAs in the absence of germline genes.

TRAV
genes
FR1-IMGT
1 to 26
CDR1-IMGT
27 to 38
FR2-IMGT
39 to 55
CDR2-IMGT
56 to 65
FR3-IMGT
66 to 104
CDR3-IMGT
(germline V-GENE)
105 to 115
(26) (4,5,7,8) (17) (0,6 to 10) (36,38) (2) (1)
TRAV1S1   8   7 -5 (aa 72 to 76) +3 (aa 84A,84B,84C) 2 (1)
TRAV2S1 to
TRAV2S4
  5   9 -5 (aa 72 to 76) +3 (aa 84A,84B,84C) 2 (1)
TRAV3S1   4   0 -5 (aa 72 to 76) +3 (aa 84A,84B,84C) 2 (1)
TRAV4S1   5   10 -5 (aa 72 to 76) +3 (aa 84A,84B,84C) 2 (1)
TRAV5S1  
7
 
8
-5 (aa 72 to 76) +3 (aa 84A,84B,84C)
2 (1)
TRAV6S1   5   6 -5 (aa 72 to 76) +1 (aa 84A) 2 (1)

IMGT note:
(1) Probable CDR3-IMGT length but needs to be confirmed with germline sequences.


Created: 21/10/1999
Last updated: Friday, 27-May-2016 21:01:31 CEST
Author: Géraldine Folch