FR-IMGT and CDR-IMGT lengths: Rainbow trout (Oncorhynchus mykiss) IGHV

Only FUNCTIONAL and ORF V-GENEs are shown.

IGHV
genes
FR1-IMGT
1 to 26
CDR1-IMGT
27 to 38
FR2-IMGT
39 to 55
CDR2-IMGT
56 to 65
FR3-IMGT
66 to 104
CDR3-IMGT
(germline V-GENE)
105 to 115
(24 to 27) (7,8,10,12) (17) (6 to 9) (36 to 38) (2)
IGHV1S1
IGHV1S2
IGHV1S3
IGHV1S4
IGHV1S5
IGHV1S6
IGHV1S7
-1 (aa 10)
-1 (aa 10)
-1 (aa 10)
-1 (aa 10)
-1 (aa 10)
-1 (aa 10)
-1 (aa 10)
7
7
8
8
8
8
8
 9
8
7
8
9
8
8
-1 (aa 73)2
IGHV2S1
IGHV2S2
IGHV2S3
+2 (aa 6A,6B)
-1 (aa 10)
8 6-1 (aa 73)2 (1)
IGHV3S1
IGHV3S2
IGHV3S3
IGHV3S4
-1 (aa 10)
-1 (aa 10)
-1 (aa 10)
-1 (aa 10)
10 7-1 (aa 73)2 (1)
IGHV4S1-2 (aa 1,10)8 9-1 (aa 73)2 (1)
IGHV5S1
IGHV5S2
IGHV5S3
IGHV5S4
IGHV5S5
IGHV5S6
IGHV5S7
IGHV5S8
IGHV5S9
-1 (aa 10)
-1 (aa 10)
-1 (aa 10)
-1 (aa 10)
-1 (aa 10)
-1 (aa 10)
-1 (aa 10)
-1 (aa 10)
-1 (aa 10)
8 8
8
8
6
8
8
8
8
7
-1 (aa 73)2 (1)
IGHV6S1
IGHV6S2
IGHV6S3
IGHV6S4
IGHV6S5
IGHV6S6
IGHV6S7
IGHV6S8
IGHV6S9
-2 (aa 1,10)
-2 (aa 1,10)
-2 (aa 1,10)
-2 (aa 1,10)
-2 (aa 1,10)
-2 (aa 1,10)
-2 (aa 1,10)
-2 (aa 1,10)
-2 (aa 1,10)
7 6
6
6
7
6
6
6
6
6
-1 (aa 73)2 (1)
IGHV7S1-1 (aa 10)12 7-1 (aa 73)2 (1)
IGHV8S1
IGHV8S2
IGHV8S3
IGHV8S4
IGHV8S5
IGHV8S6
IGHV8S7
IGHV8S8
IGHV8S9
IGHV8S10
IGHV8S11
 
-2 (aa 10,11)
-1 (aa 10)
 
 
 
 
 
 
-1 (aa 10)
 
8 7-3 (aa 73,82,83)2 (1)
IGHV9S1
IGHV9S2
IGHV9S3
IGHV9S4
IGHV9S5
IGHV9S6
-1 (aa 10)
-1 (aa 10)
-1 (aa 10)
-1 (aa 10)
-1 (aa 10)
-1 (aa 10)
8 7-1 (aa 73)2 (1)
IGHV10S1-1 (aa 10)8 6-1 (aa 73)2 (1)
IGHV11S1-1 (aa 10)8 7-2 (aa 73,82)2 (1)

IMGT Note:
(1)Probable CDR3-IMGT length but needs to be confirmed with germline sequences.


Created: 25/11/1997
Last updated: Monday, 20-Jan-2020 21:00:37 CET
Author: Manuel Ruiz and Nathalie Bosc