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IMGT Scientific chart
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In order to provide the highest data quality, we have defined:
IMGT Scientific chart
rules based on the
IMGT-ONTOLOGY
concepts
Correspondence between the IMGT-ONTOLOGY concepts and the IMGT Scientific chart rules
IMGT-ONTOLOGY and IMGT Scientific chart rules and examples in ImmunoGrid
1. Sequence and 3D structure identification and description
IMGT reference sequences
IMGT standardized keywords
IMGT/LIGM-DB standardized labels
IMGT/LIGM-DB qualifiers list and definition
IMGT prototypes
Prototypes based on the IMGT concepts of description (IMGT/LIGM-DB labels)
Functionality
How to qualify a gene (structure and localization)
IMGT/PROTEIN-DB and IMGT/3Dstructure-DB: Standardized keywords and labels for IG, TR, MHC, RPI and FPIA
IMGT/PROTEIN-DB and IMGT/3Dstructure-DB: Label definitions for IG, TR and MHC
Correspondence between labels for IG and TR domains in IMGT/3Dstructure-DB and IMGT/LIGM-DB
Lengths of the G-DOMAIN and G-LIKE-DOMAIN labels
2. Numbering
IMGT numbering for coding regions (Overview)
IMGT numbering of additional codons (or amino acids) and corresponding nucleotides
IMGT unique numbering for all IG and TR V-REGIONs of all species: interest for structure and evolution
IMGT unique numbering for V-DOMAIN and V-LIKE-DOMAIN
IMGT unique numbering for C-DOMAIN and C-LIKE-DOMAIN
IMGT unique numbering for G-DOMAIN and G-LIKE-DOMAIN
Rules for the gaps and additional positions in C-DOMAIN and C-LIKE-DOMAIN
Correspondence between V numberings
Correspondence between C numberings
Correspondence between G numberings
3. Nomenclature
IMGT gene name nomenclature for IG and TR of human and other vertebrates
Definition of the FR-IMGT and CDR-IMGT regions
IMGT allele nomenclature for sequence polymorphisms
IMGT taxon abbreviations
IMGT description of mutations
IMGT RFLP allele nomenclature
Correspondence between the different nomenclatures
4. Representation rules
IMGT color menu
Abbreviations
Uncertain nucleotides
IMGT orthographe
IMGT annotation rules
Created:
04/05/1998
Last updated:
Monday, 27-May-2013 22:00:47 CEST
Author:
Marie-Paule Lefranc
Editor:
Chantal Ginestoux